Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BG60_04820Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)    
Predicted Functional Partners:
BG60_04815
Ribosome-recycling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.983
BG60_04825
Elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
BG60_29150
Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.980
BG60_04830
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.975
BG60_24505
Nucleoside diphosphate kinase; Catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.954
BG60_32990
Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.954
pyrF
Orotidine 5'-phosphate decarboxylase; Type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.950
BG60_15640
50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.942
BG60_04810
UDP diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.932
BG60_04805
Phosphatidate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.915
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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