Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
BG60_0483030S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)    
Predicted Functional Partners:
BG60_13685
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
rplL
50S ribosomal protein L7/L12; Present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
BG60_15670
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
BG60_15675
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
BG60_15740
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
BG60_15810
30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
BG60_15820
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
BG60_23385
30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
BG60_26895
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
rpsP
30S ribosomal protein S16; Binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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