Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_05120Integration host factor subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)    
Predicted Functional Partners:
BG60_10135
Integration host factor subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.990
BG60_05115
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.959
BG60_22335
Acyl carrier protein; Carries the fatty acid chain in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.901
BG60_05140
50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.863
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.841
BG60_24555
Protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.820
BG60_30595
Nucleoprotein, Hfg, host factor I; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.820
BG60_11490
Cell division protein ZapA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.818
BG60_10015
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.786
BG60_11785
Clp protease ClpS; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.782
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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