Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_05390Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)    
Predicted Functional Partners:
BG60_08015
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.528
BG60_34375
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.513
BG60_27160
Amino acid:proton symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.509
BG60_18245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.469
pepN
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.454
putA
Transcriptional regulator; Proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.452
BG60_20670
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.416
BG60_19130
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.407
BG60_21575
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.407
BG60_32540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.407
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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