Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_06165Amino acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)    
Predicted Functional Partners:
BG60_06155
Hydroxyproline-2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.949
BG60_06170
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.948
BG60_06160
Dihydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.911
BG60_07375
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.877
BG60_31710
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.877
BG60_15980
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.868
BG60_36040
Hydroxyproline-2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.792
BG60_06175
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
BG60_06150
Peptidase M38; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.726
BG60_07370
Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.701
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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