Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
BG60_06685Pyrroloquinoline quinone biosynthesis protein PqqD; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)    
Predicted Functional Partners:
BG60_06680
Pyrroloquinoline quinone biosynthesis protein PqqC; Required in the synthesis of PPQ, but its exact function is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.989
BG60_06675
Pyrroloquinoline quinone biosynthesis protein PqqB; Possibly involved in transport of pyrroloquinoline quinone transport; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.986
BG60_06690
Pyrroloquinoline quinone biosynthesis protein PqqE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.978
BG60_06695
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.787
BG60_30960
Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.743
BG60_38095
Quinonprotein alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.726
BG60_20665
Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.714
BG60_06670
Cytochrome B561; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.701
BG60_06650
Formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.656
BG60_06655
Formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.645
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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