Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
BG60_06865Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)    
Predicted Functional Partners:
BG60_06920
Squalene--hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.875
BG60_06900
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.819
BG60_06860
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.817
BG60_06855
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.802
BG60_37220
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.802
BG60_06915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.791
BG60_29850
3,4-dihydroxy-2-butanone 4-phosphate synthase; Bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.785
BG60_37435
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.783
BG60_31100
Guanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.781
BG60_32130
Ribonucleotide-diphosphate reductase subunit alpha; Catalyzes the rate-limiting step in dNTP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.778
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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