Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BG60_06915Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)    
Predicted Functional Partners:
BG60_06920
Squalene--hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.969
BG60_06925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.935
BG60_06930
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.922
BG60_06865
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.791
BG60_06900
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.791
BG60_29995
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.775
BG60_06855
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.774
BG60_27340
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.771
BG60_34120
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.770
BG60_06835
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.756
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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