Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BG60_08090Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)    
Predicted Functional Partners:
BG60_30155
Cell division topological specificity factor MinE; Works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.715
BG60_12015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.701
BG60_22055
Transcriptional regulator PhoU; Regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.685
BG60_23265
Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.651
BG60_08095
Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.645
BG60_14855
Phosphatidylserine decarboxylase; Catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.548
BG60_02410
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.546
BG60_22290
Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.515
BG60_31590
glutaminyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.511
BG60_13285
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.510
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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