Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_08435Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)    
Predicted Functional Partners:
BG60_08425
2-deoxy-D-gluconate 3-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.777
BG60_38135
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.771
BG60_08430
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.603
BG60_08420
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.591
BG60_03075
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.588
BG60_11385
methionyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.490
BG60_04545
NAD-dependent deacetylase; Modulates the activities of several enzymes which are inactive in their acetylated form; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.488
BG60_10160
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.466
BG60_08440
Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.455
BG60_08445
Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.455
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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