Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
BG60_10900RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)    
Predicted Functional Partners:
BG60_10895
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.974
BG60_10890
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.937
BG60_10630
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.817
BG60_10625
RND transporter MFP subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.811
BG60_10620
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.730
BG60_10880
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.685
BG60_24020
Divalent cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
BG60_08380
EmrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.650
BG60_24010
Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.630
BG60_17385
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.605
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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