Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_11880DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (865 aa)    
Predicted Functional Partners:
BG60_11885
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.959
BG60_11870
RNA procession exonuclease-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.954
BG60_11875
ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.953
BG60_30045
DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.753
BG60_30775
Ethanolamine utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.753
BG60_13295
formamidopyrimidine-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.748
BG60_04935
DNA repair protein RadA; Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.660
BG60_22235
Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.509
BG60_13080
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.469
BG60_11865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.466
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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