Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_12330Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)    
Predicted Functional Partners:
BG60_12325
Prevent-host-death protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.959
putA
Transcriptional regulator; Proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.850
BG60_03605
CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.824
BG60_01900
CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.803
BG60_12320
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.686
BG60_12870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.679
BG60_34690
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
BG60_12310
Methionine biosynthesis protein MetW; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
metX
Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
BG60_09590
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.462
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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