Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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Experiments
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[Homology]
Score
BG60_12530Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)    
Predicted Functional Partners:
BG60_10185
3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.970
BG60_37115
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.812
BG60_20190
Fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.802
BG60_13520
Ubiquinone biosynthesis methyltransferase UbiE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.773
BG60_01315
Decarboxylase UbiD; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.728
BG60_19890
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.728
BG60_29875
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.728
BG60_20310
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.714
BG60_13905
4-hydroxybenzoate polyprenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.710
BG60_31900
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.702
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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