Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BG60_13965Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1437 aa)    
Predicted Functional Partners:
BG60_13960
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.788
BG60_13345
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
BG60_12755
Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
BG60_13340
Organic solvent tolerance protein OstA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.743
BG60_12805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.737
BG60_32550
Tol system periplasmic component YbgF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.726
BG60_13530
Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.714
tldD
Protease TldD; Responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.688
BG60_12765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.686
BG60_12970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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