Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_14090Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)    
Predicted Functional Partners:
BG60_14100
rRNA maturation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.929
BG60_14085
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.892
BG60_14105
phoH-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.750
BG60_14110
(dimethylallyl)adenosine tRNA methylthiotransferase; Catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.594
BG60_37285
tRNA pseudouridine synthase A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.584
BG60_14080
glycyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.583
BG60_14075
glycyl-tRNA synthetase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.574
BG60_14065
Acyl-phosphate glycerol 3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.569
BG60_24585
Adenylosuccinate synthetase; Catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.555
BG60_14060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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