STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG60_14760Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)    
Predicted Functional Partners:
BG60_14755
Ala-tRNA(Pro) hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.785
BG60_14745
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.590
BG60_14750
Cyanoglobin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.572
BG60_14740
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.527
BG60_38125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
BG60_22900
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.469
BG60_14765
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.449
BG60_21105
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.403
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.