STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrGCTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)    
Predicted Functional Partners:
BG60_13680
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.989
BG60_15770
50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.982
BG60_15755
50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.980
BG60_15695
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.977
rplW
50S ribosomal protein L23; Binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.976
BG60_15700
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.970
BG60_15745
50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.970
BG60_15710
50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.969
BG60_15785
50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.968
BG60_15775
50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.967
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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