Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
BG60_15060RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)    
Predicted Functional Partners:
BG60_04760
Ribonuclease HII; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.702
BG60_22095
23S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.678
BG60_15090
cysteinyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.665
BG60_09820
Nicotinate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.646
BG60_15055
Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.637
BG60_15065
Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.539
BG60_16720
ProP effector; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.494
BG60_30080
DNA-directed RNA polymerase subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
BG60_15035
DNA mismatch repair protein MutS; This protein performs the mismatch recognition step during the DNA repair process; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.461
BG60_33385
tRNA-dihydrouridine synthase A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.458
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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