Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_164553-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)    
Predicted Functional Partners:
BG60_16460
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.952
BG60_16465
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.909
BG60_16470
Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.839
BG60_03115
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.794
BG60_23395
Glyoxylate carboligase; Catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.793
BG60_16450
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.788
BG60_16475
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.788
BG60_23400
Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.740
BG60_36915
3-methylcrotonyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.687
BG60_23150
Glycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.663
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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