Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
BG60_16495Cysteine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)    
Predicted Functional Partners:
BG60_02385
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.933
BG60_02045
Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.913
BG60_16500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.781
BG60_38155
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.753
BG60_13065
Glycerol-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.639
BG60_16505
FdrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.639
BG60_02050
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.635
BG60_02380
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.605
BG60_02140
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
amiF
Formamidase; Formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.591
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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