Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
BG60_16805Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)    
Predicted Functional Partners:
BG60_10160
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.839
BG60_16800
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.741
BG60_06010
Hydroperoxidase; Has catalase and peroxidase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.664
BG60_31190
Thiamine biosynthesis protein ThiC; Catalyzes the formation of 4-amino-2-methyl-5-phosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole and S-adenosyl-L-methionine in thiamine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.639
BG60_37295
Tryptophan synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.637
BG60_37305
Tryptophan synthase alpha chain; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.637
BG60_11395
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.606
BG60_32845
Superoxide dismutase; SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.568
BG60_16810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.561
BG60_06735
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.528
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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