Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
BG60_18985Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)    
Predicted Functional Partners:
BG60_18975
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.908
BG60_38275
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.821
BG60_35695
RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.799
BG60_22825
RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.787
BG60_18980
Extradiol dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.681
BG60_20100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.514
BG60_18990
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.428
BG60_32340
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.402
BG60_16775
Extradiol dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.400
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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