Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_20665Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)    
Predicted Functional Partners:
BG60_06675
Pyrroloquinoline quinone biosynthesis protein PqqB; Possibly involved in transport of pyrroloquinoline quinone transport; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.824
BG60_20660
Pyrroloquinoline quinone biosynthesis protein PqqD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.818
BG60_06680
Pyrroloquinoline quinone biosynthesis protein PqqC; Required in the synthesis of PPQ, but its exact function is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.812
BG60_30970
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.799
BG60_06690
Pyrroloquinoline quinone biosynthesis protein PqqE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.773
BG60_20670
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.770
BG60_06715
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.769
BG60_29765
RpiR family transcriptional regulator; Glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.731
BG60_06685
Pyrroloquinoline quinone biosynthesis protein PqqD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.714
BG60_06705
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.705
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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