Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_21365DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (904 aa)    
Predicted Functional Partners:
BG60_21360
DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.992
BG60_27930
DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.974
BG60_12075
DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.913
BG60_27665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.857
BG60_37485
DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.838
BG60_34715
Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.804
BG60_11870
RNA procession exonuclease-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.778
BG60_14070
D,D-heptose 1,7-bisphosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.752
BG60_26035
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.752
BG60_11875
ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.744
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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