Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BG60_21420TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (695 aa)    
Predicted Functional Partners:
BG60_21280
Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.866
BG60_00790
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.558
BG60_02105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.480
BG60_21425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.468
BG60_15310
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.467
BG60_37110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.467
BG60_10215
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.445
BG60_36385
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.414
BG60_08585
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.412
BG60_15320
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.409
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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