Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BG60_21470Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (976 aa)    
Predicted Functional Partners:
BG60_21465
(Fe-S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
BG60_21460
DMSO reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.991
BG60_15155
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.967
BG60_08580
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.901
BG60_02700
Cytochrome C biogenesis protein CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.878
BG60_36155
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.857
BG60_37610
3-mercaptopyruvate sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.857
BG60_11580
Sulfite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.852
BG60_11570
Phosphoadenosine phosphosulfate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.850
BG60_33505
Sulfate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.849
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.