Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_21800Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)    
Predicted Functional Partners:
BG60_29330
Endonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.873
BG60_12075
DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.858
BG60_12295
Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
0.824
BG60_13300
Adenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.819
BG60_27255
uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.783
BG60_04850
tRNA synthetase RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.696
BG60_11620
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.696
BG60_11800
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.696
BG60_17420
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.696
BG60_24555
Protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.689
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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