Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_21980Alkylphosphonate ABC transporter substrate-binding protein; With PhnCE is involved in the transport of phosphonates; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)    
Predicted Functional Partners:
BG60_21975
Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
BG60_21940
Carbon-phosphorus lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.983
BG60_21945
Carbon-phosphorus lyase complex subunit PhnI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.977
BG60_21950
Carbon-phosphorus lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.970
BG60_21955
Alkylphosphonate utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.961
BG60_21930
Phosphonate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.959
phnK
Phosphonate C-P lyase system protein PhnK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.953
BG60_21960
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.931
BG60_21970
Ribose-phosphate pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.907
BG60_21925
Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.898
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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