Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_22100RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)    
Predicted Functional Partners:
BG60_29175
Nicotinate-nucleotide adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.874
BG60_15635
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.806
BG60_29180
Iojap domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.736
BG60_22095
23S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.727
BG60_12265
Rod shape-determining protein MreC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.584
BG60_14910
Competence protein ComEC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.581
aroE-2
AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.549
BG60_22090
Cell division protein FtsH; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.535
aroE
AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.532
infA
Stimulates the activities of the other two initiation factors, IF-2 and IF-3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.522
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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