Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BG60_22275DNA recombination protein RecO; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)    
Predicted Functional Partners:
BG60_22280
GTPase Era; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.956
recR
Recombination protein RecR; Involved in a recombinational process of DNA repair, independent of the recBC complex; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.917
BG60_22270
Pyridoxine 5'-phosphate synthase; Involved in the de novo synthesis of pyridoxine (Vitamin B6); Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.912
BG60_14105
phoH-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.885
BG60_22265
4'-phosphopantetheinyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.881
BG60_22285
Ribonuclease III; Cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.880
BG60_22260
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.772
BG60_14340
RecX family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.749
BG60_19245
Phosphoribosylformylglycinamidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.711
BG60_22370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.687
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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