Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_22470Peptidase S66; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)    
Predicted Functional Partners:
BG60_22465
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.854
BG60_24940
methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.816
BG60_22460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.812
BG60_14475
D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.725
BG60_08810
Peptidase S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.655
BG60_22260
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.597
BG60_12255
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.529
BG60_04970
DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.481
BG60_22450
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.459
BG60_22445
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.453
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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