Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_22485Asp/Glu racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)    
Predicted Functional Partners:
BG60_22490
Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.954
BG60_22495
OHCU decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.896
BG60_22480
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.878
BG60_34530
OHCU decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.807
BG60_36660
Phenylhydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.734
BG60_33000
Dihydroorotase; Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.678
BG60_22500
Allantoicase; Catalyzes the formation of S-ureidoglycolate and urea from allantoate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.636
BG60_22505
Ureidoglycolate hydrolase; Catalyzes the formation of glyoxylate from (S)-ureidoglycolate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.600
BG60_31070
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.575
BG60_34510
5-hydroxyisourate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.573
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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