Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BG60_24480Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)    
Predicted Functional Partners:
BG60_24470
Stationary phase survival protein SurE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.893
BG60_24475
protein-L-isoaspartate O-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.870
BG60_24485
RNA polymerase sigma factor RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.870
BG60_31330
Lipoprotein NlpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.766
BG60_24490
3'-5' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.650
BG60_22290
Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.604
BG60_30595
Nucleoprotein, Hfg, host factor I; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.569
BG60_24555
Protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.564
BG60_24465
NADPH:quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.561
BG60_22615
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.554
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.