Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BG60_25425XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)    
Predicted Functional Partners:
BG60_25420
Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.781
BG60_07200
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.711
BG60_05515
Catalyzes the formation of fumarate from malate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.635
nadE
NAD synthetase; Catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.570
BG60_28685
Amino acid acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.512
BG60_25430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.484
BG60_25435
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.481
BG60_17655
Malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.445
BG60_32320
Malate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.445
BG60_34075
Malate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.445
Your Current Organism:
Caballeronia zhejiangensis
NCBI taxonomy Id: 871203
Other names: Burkholderia sp. OP-1, Burkholderia zhejiangensis, C. zhejiangensis, CCTCC AB 2010354, Caballeronia zhejiangensis (Lu et al. 2012) Dobritsa and Samadpour 2016, DSM 28073, KCTC 23300, LMG 27258, LMG:27258, Paraburkholderia zhejiangensis, Paraburkholderia zhejiangensis (Lu et al. 2012) Sawana et al. 2015, strain OP-1
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