STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE43642.1Spore germination protein YaaH; Belongs to the glycosyl hydrolase 18 family. (346 aa)    
Predicted Functional Partners:
SHE98192.1
PKD-like domain-containing protein.
   
 0.845
SHE29247.1
Oligosaccharide reducing-end xylanase.
    
 0.750
SHF16093.1
2-oxoisovalerate dehydrogenase E1 component.
   
 
  0.685
SHF62109.1
Plasmid recombination enzyme.
    
 
 0.681
SHF89974.1
Beta-glucosidase.
   
 
 0.640
SHE30426.1
LysM domain-containing protein.
    
 0.576
SHE77790.1
Hypothetical protein.
    
 
 0.561
SHF24754.1
Glycine/D-amino acid oxidase.
  
 
 0.522
SHF46859.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
  
 
 0.521
SHE43799.1
Putative binding domain-containing protein, N-terminal.
  
 
 0.486
Your Current Organism:
Bacteroides faecichinchillae
NCBI taxonomy Id: 871325
Other names: B. faecichinchillae, Bacteroides faecichinchillae Kitahara et al. 2012, CCUG 60873, JCM 17102, strain ST37
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