STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE94464.1LemA protein. (193 aa)    
Predicted Functional Partners:
SHE94428.1
Uncharacterized protein.
 
    0.893
SHE94503.1
Phosphoribosylformylglycinamidine cyclo-ligase.
       0.522
prfA
Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.522
pyrF
Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
       0.480
SHE94611.1
Hypothetical protein.
       0.479
SHE94390.1
Hypothetical protein.
       0.472
Your Current Organism:
Bacteroides faecichinchillae
NCBI taxonomy Id: 871325
Other names: B. faecichinchillae, Bacteroides faecichinchillae Kitahara et al. 2012, CCUG 60873, JCM 17102, strain ST37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.