STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF08908.1Phage derived protein Gp49-like. (114 aa)    
Predicted Functional Partners:
SHF08883.1
Helix-turn-helix.
 
   
 0.960
SHE70805.1
Transcriptional regulator, y4mF family.
 
 
 0.852
SHF08849.1
Conserved hypothetical protein (putative transposase or invertase).
       0.554
SHF24172.1
Transcriptional regulator, AlpA family.
  
     0.425
SHE74687.1
Helix-turn-helix.
 
   
 0.410
Your Current Organism:
Bacteroides faecichinchillae
NCBI taxonomy Id: 871325
Other names: B. faecichinchillae, Bacteroides faecichinchillae Kitahara et al. 2012, CCUG 60873, JCM 17102, strain ST37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.