STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF24726.1OmpA family protein. (380 aa)    
Predicted Functional Partners:
SHF24618.1
DNA helicase-4.
 
     0.696
SHF82427.1
Glycosyl hydrolases family 28.
  
     0.692
SHE99341.1
Protein of unknown function.
  
     0.630
SHF78752.1
DNA N-6-adenine-methyltransferase (Dam).
  
    0.620
SHF28564.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.581
SHF65034.1
Protein of unknown function.
  
     0.579
SHF96288.1
Hypothetical protein.
  
 0.555
SHE98341.1
Hypothetical protein.
  
     0.554
SHF24754.1
Glycine/D-amino acid oxidase.
  
    0.539
SHE90986.1
Fucose 4-O-acetylase.
  
     0.524
Your Current Organism:
Bacteroides faecichinchillae
NCBI taxonomy Id: 871325
Other names: B. faecichinchillae, Bacteroides faecichinchillae Kitahara et al. 2012, CCUG 60873, JCM 17102, strain ST37
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