STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF39641.1Protein of unknown function. (394 aa)    
Predicted Functional Partners:
SHF28368.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.869
SHF39622.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
  
    0.839
SHF03306.1
Heterodimeric methylmalonyl-CoA mutase small subunit.
    
 0.701
SHF03350.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
    
 0.701
secA
Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
       0.679
SHF39743.1
LPS export ABC transporter protein LptC.
 
     0.655
SHF39571.1
Hypothetical protein.
 
     0.622
SHF39697.1
Long-chain fatty acid transport protein.
  
    0.621
coaX
Type III pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.619
SHF28963.1
Pyruvate carboxylase subunit B.
    
 0.613
Your Current Organism:
Bacteroides faecichinchillae
NCBI taxonomy Id: 871325
Other names: B. faecichinchillae, Bacteroides faecichinchillae Kitahara et al. 2012, CCUG 60873, JCM 17102, strain ST37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.