STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF75025.1YD repeat-containing protein. (335 aa)    
Predicted Functional Partners:
SHF42223.1
RHS repeat-associated core domain-containing protein.
 
     0.780
SHG04612.1
Hypothetical protein.
 
     0.780
SHG05824.1
Hypothetical protein.
 
     0.779
SHF42160.1
RHS repeat-associated core domain-containing protein.
 
     0.777
SHF43346.1
YD repeat-containing protein.
 
     0.773
SHF43505.1
YD repeat-containing protein.
 
     0.773
SHF65649.1
YD repeat-containing protein.
 
     0.773
SHF93225.1
YD repeat-containing protein.
 
     0.773
SHG06893.1
Hypothetical protein.
  
     0.773
SHG07480.1
RHS repeat-associated core domain-containing protein.
 
     0.772
Your Current Organism:
Bacteroides faecichinchillae
NCBI taxonomy Id: 871325
Other names: B. faecichinchillae, Bacteroides faecichinchillae Kitahara et al. 2012, CCUG 60873, JCM 17102, strain ST37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.