STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA69649.1Ribbon-helix-helix protein, copG family. (144 aa)    
Predicted Functional Partners:
SFA69661.1
Type IV secretion system protein VirD4.
     0.986
SFA69766.1
Plasmid stabilization system protein ParE.
  
 
 0.980
SFA69576.1
Type IV secretion system protein VirB11.
     0.951
SFA69670.1
Type IV secretory pathway, VirD2 components (relaxase).
 
     0.948
SFA69704.1
Protein of unknown function.
 
     0.874
SFA69695.1
Conjugative transfer signal peptidase TraF.
 
     0.873
SFA69712.1
Transcriptional regulator, AlpA family.
 
     0.868
SFA69558.1
Type IV secretion system protein VirB3.
 
     0.848
SFA69502.1
Type IV secretion system protein VirB5.
 
     0.847
SFA69513.1
Type IV secretion system protein TrbL.
 
     0.847
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.