STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA70733.1Cna protein B-type domain-containing protein. (1219 aa)    
Predicted Functional Partners:
SFB01727.1
DNA translocase FtsK.
    
   0.786
SFA90653.1
Ferric enterobactin receptor.
    
 
 0.740
SFB11200.1
Autotransporter adhesin.
  
 0.682
SFA70724.1
Hypothetical protein.
  
     0.566
SFA70153.1
Acyl carrier protein.
  
   0.527
SFA71190.1
acyl-CoA thioesterase-1.
   
  0.476
SFA85589.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
   
   0.460
SFA78479.1
Hypothetical protein.
 
 
   0.455
SFA78128.1
Phage conserved hypothetical protein, phiE125 gp8 family.
   
  0.443
SFA98377.1
Ca2+-binding protein, RTX toxin-related.
  
  0.439
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.