STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA75864.1Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. (231 aa)    
Predicted Functional Partners:
SFB14497.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.920
SFB17127.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.920
selO
Uncharacterized conserved protein YdiU, UPF0061 family; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.
       0.783
SFB07938.1
Cardiolipin synthetase 2.
 
 
  0.684
SFA75373.1
Hypothetical glycoside hydrolase 5.
  
 
  0.671
SFA75896.1
Acetyltransferase (GNAT) family protein.
       0.628
SFA75907.1
Purine nucleosidase.
       0.628
SFA74359.1
Phosphatidylglycerol lysyltransferase.
  
  
 0.511
SFA75831.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
       0.478
SFA75818.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
       0.466
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.