STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA76047.1Hypothetical protein. (471 aa)    
Predicted Functional Partners:
SFA76078.1
Putative membrane protein.
 
  
 0.995
SFA76061.1
L-amino acid N-acyltransferase YncA.
       0.791
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.717
SFA98254.1
Penicillin-insensitive murein endopeptidase.
  
     0.620
SFA91045.1
Molybdopterin synthase subunit MoaD.
  
     0.469
SFA79181.1
Protein of unknown function.
  
    0.458
SFA84881.1
ATP phosphoribosyltransferase catalytic subunit; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.
  
    0.439
SFB17950.1
Exodeoxyribonuclease-5.
  
     0.437
SFA97085.1
Invasion protein IalB, involved in pathogenesis.
  
     0.416
SFB01173.1
Ribonuclease T2; Belongs to the RNase T2 family.
  
     0.413
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.