STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA86267.1Glycolate oxidase. (480 aa)    
Predicted Functional Partners:
SFA86248.1
Glycolate oxidase iron-sulfur subunit.
 
 0.989
SFA86259.1
Glycolate oxidase FAD binding subunit.
  
  0.977
SFA94593.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
   
   0.818
SFA77821.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.801
SFB17912.1
Glycerol-3-phosphate acyltransferase.
    
 0.789
ubiA
4-hydroxybenzoate polyprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
    
 0.757
SFA90245.1
Glutamate synthase (NADPH) large subunit.
    
 0.752
SFA77811.1
L-lactate dehydrogenase (cytochrome).
 
 0.715
SFA80501.1
4-hydroxymandelate oxidase.
 
 0.715
SFA84603.1
Pyruvate dehydrogenase E1 component alpha subunit.
    
 0.690
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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