STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA86306.1N-terminal double-transmembrane domain-containing protein. (914 aa)    
Predicted Functional Partners:
SFA86297.1
Hypothetical protein.
 
     0.966
SFA86315.1
Protein of unknown function DUF58.
 
    0.966
SFA86325.1
MoxR-like ATPase.
 
     0.886
SFA86335.1
Hypothetical protein.
 
     0.845
SFA77733.1
Squalene/phytoene synthase.
 
 
 0.809
SFA90408.1
TIGR02302 family protein.
  
    0.775
SFA84858.1
Hypothetical protein.
  
     0.685
SFA96219.1
Tetratricopeptide repeat-containing protein.
  
     0.652
SFA72999.1
AsmA-like C-terminal region.
  
     0.636
SFA85487.1
Transcriptional regulator, XRE family.
  
     0.619
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.