STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA86963.1Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain. (680 aa)    
Predicted Functional Partners:
SFA75818.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
 
 
 0.888
SFA74285.1
Protein of unknown function.
 
   
 0.875
SFA75858.1
Virulence factor.
 
     0.848
SFA74308.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
    0.822
SFA74346.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
 
   0.818
SFA77516.1
Trimethylamine---corrinoid protein Co-methyltransferase; Belongs to the trimethylamine methyltransferase family.
 
     0.801
SFA75841.1
Methylenetetrahydrofolate reductase (NADPH).
 
     0.736
SFA79143.1
Hypothetical protein.
  
     0.650
SFA86954.1
Hypothetical protein.
       0.588
SFA86925.1
Hypothetical protein.
       0.423
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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