STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA87498.1NitT/TauT family transport system permease protein. (297 aa)    
Predicted Functional Partners:
SFA87510.1
NitT/TauT family transport system ATP-binding protein.
 
 
  0.971
SFA87475.1
NitT/TauT family transport system substrate-binding protein.
 
 
  0.927
SFA69159.1
Taurine transport system substrate-binding protein.
  
 
 0.919
SFA87523.1
Dihydropyrimidinase.
 
     0.780
SFA87486.1
NitT/TauT family transport system permease protein.
 
  
 
0.745
SFB11410.1
Putative hydroxymethylpyrimidine transport system substrate-binding protein.
 
  0.736
SFA87559.1
Transcriptional regulator, TetR family.
 
     0.609
SFB11392.1
Putative hydroxymethylpyrimidine transport system ATP-binding protein.
  
 
  0.607
SFA87531.1
N-carbamoyl-L-amino-acid hydrolase.
 
     0.598
SFA71580.1
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
 0.596
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.