STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA88040.1Peptide/nickel transport system substrate-binding protein. (524 aa)    
Predicted Functional Partners:
SFA88053.1
Peptide/nickel transport system permease protein.
  0.935
SFA88057.1
Peptide/nickel transport system permease protein.
 
  0.932
SFA88089.1
Thiamine kinase.
 
     0.902
SFA88102.1
Thiamine kinase.
 
     0.900
SFA88069.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
  0.889
SFA88028.1
Histidinol-phosphatase, inositol monophosphatase family.
 
     0.712
SFA88081.1
N-carbamoyl-L-amino-acid hydrolase.
 
     0.681
SFA73914.1
Peptide/nickel transport system permease protein.
 
  0.650
SFA73900.1
Peptide/nickel transport system permease protein.
  
  0.614
SFA88115.1
Ethanolamine ammonia-lyase heavy chain.
       0.592
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.